Flo's links
April 2001: No attempt is made to maintain this page. You'd better go to the Deambulum
Topics
Developmental biology
Protein
- SWISS-PROT
- SWISS-PROT annotated protein sequence database
- PROSITE - PROSITE
protein sites and patterns
- BLOCKS - BLOCKS database
- PRINTS
- Protein Motif fingerprint database
- PRODOM - Protein domain
database
Protein 3D structure
- PDB - Protein Data Bank
- SWISS-3DIMAGE
- 3D images of proteins
- SCOP - Structural classification
of proteins
Nucleic acid
- EMBL
- EMBL Nucleotide sequence database (EBI)
- Genbank
- GenBank Nucleotide Sequence database (NCBI)
- dbEST - dbEST
database (EBI)
- dbSTS - dbSTS
database (EBI)
- TIGR - Human cDNA
database
- Vector db
- Vector sequence db
- IMGT - ImMunoGeneTics database
Organism specific databases
Human
- OMIM - Online Mendelian
Inheritance in Man
- GDB - Genome Data Base
other animals
- OMIA
- Online Mendelian Inheritance in Animals
- MGD - Mouse
- TBASE - The Transgenic/Targeted
Mutation Database
- The fish net - An access to
Zebrafish Research Databases
Insects (Drosophila)
nematode
- AceDb - Caenorhabditis
elegans
plants
yeast
- SGD - Saccharomyces
Genome Database
smaller organisms
- ECDC
- E.coli database collection
- EcoCyc - Encyclopedia
of E.coli genes and metabolism
- NRSub - Bacillus
subtilis non-redundant database
- MadBase
- Microbial advanced database (B.subtilis)
- HIV - HIV database
Molecule specific databases or resources
- ENZYME - Enzymes
nomenclature database
- REBASE - Restriction enzymes
and methylases
- EMP - Enzymes and
Metabolic Pathway database
- GRBase
- Gene regulation database
- GPCRDB - The G protein-
coupled receptor information system (7TM) at the CMBI, NL (previously at the EMBL,de). A very well curated databank ;)
- GCRDb
- G protein-coupled receptor database (the server seems to be down)
- MitoDat - mitochondrial
nuclear genes
- Oncogene - Tumor
gene database
- The Nuclear receptor resource - a collection of individual databases on members of the steroid
and thyroid hormone receptor superfamily.
- SRPDB - Signal
Recognition Particle database
- TRANSFAC
- Transcription factors database
Pathways
- EcoCyc - Encyclopedia of E. coli Genes and Metabolism
- Kegg - Kyoto Encyclopedia of Genes and Genomes
- BRITE - Cell
Cycle Controlling Pathways
- SPAD
- Signaling pathway database
- PUMA
- an environment to support the interpretation and presentation of genomes
Computational facilities for sequences
- The BIOcomputing Unit at the EMBL.
- The SRS5 multiple
database retrieval system.
- PSORT - Prediction of Protein
Sorting Signals
- MOTIF - Protein
Sequence Motif Search
- TFSEARCH -
Searching Transcription Factor Binding Sites
Bibliographic search
Other link pages
Net search engines
Miscellaneous
Useful links
FH. 3-Dec-01